Protocols

• VariantProtocolorg.gel.models.cva.avro

Types

• org.gel.models.cva.avro

  • Variant
  • VariantRepresentation

• org.gel.models.participant.avro

  • AnalysisPanel
  • Ancestries
  • ChiSquare1KGenomesPhase3Pop
  • ClinicalEthnicity Enum
  • ClinicalIndication
  • ConsentStatus
  • Date
  • EthnicCategory Enum
  • FamiliarRelationship Enum
  • GenericConsent Enum
  • GermlineSample
  • GmsConsentStatus
  • HaematologicalCancerLineage Enum
  • InbreedingCoefficient
  • KgPopCategory Enum
  • KgSuperPopCategory Enum
  • Method Enum
  • Morphology
  • Penetrance Enum
  • PersonKaryotipicSex Enum
  • PreparationMethod Enum
  • PreviousTreatment
  • PrimaryOrMetastatic Enum
  • Product Enum
  • ProgrammePhase Enum
  • SampleSource Enum
  • Sex Enum
  • StorageMedium Enum
  • TernaryOption Enum
  • TissueSource Enum
  • Topography
  • TumourContent Enum
  • TumourPresentation Enum
  • TumourSample
  • TumourType Enum
  • diseaseType Enum

• org.gel.models.report.avro

  • AcmgEvidence
  • AcmgEvidenceCategory Enum
  • AcmgEvidenceType Enum
  • AcmgEvidenceWeight Enum
  • AcmgVariantClassification
  • Actions
  • ActivationStrength Enum
  • AgeRange
  • AlgorithmBasedVariantClassification
  • AlleleFrequency
  • AlleleOrigin Enum
  • AmpClincialOrExperimentalEvidence
  • AmpClinicalOrExperimentalEvidenceCategory Enum
  • AmpClinicalOrExperimentalEvidenceLevel Enum
  • AmpEvidence
  • AmpEvidenceType Enum
  • AmpTier Enum
  • AmpVariantClassification
  • Aneuploidy
  • Assembly Enum
  • BreakPoint
  • ChromosomalRearrangement
  • ClinicalSignificance Enum
  • ConfidenceInterval
  • Coordinates
  • DemographicElegibilityCriteria
  • Diagnostic
  • Domain Enum
  • DrugResponse
  • DrugResponseClassification Enum
  • GenePanel
  • GenomicEntity
  • GenomicEntityType Enum
  • GuidelineBasedVariantClassification
  • Identifier
  • IdentityByDescent
  • Indel Enum
  • Intervention
  • InterventionType Enum
  • Karyotype
  • ModeOfInheritance Enum
  • NumberOfCopies
  • Ontology
  • Orientation Enum
  • OtherAction
  • PhaseGenotype
  • Phenotypes
  • PrimaryPurpose Enum
  • Prognosis
  • PrognosisClassification Enum
  • Rearrangement
  • ReportEvent
  • RoleInCancer Enum
  • SegregationPattern Enum
  • ShortTandemRepeat
  • ShortTandemRepeatReferenceData
  • SmallVariant
  • StandardPhenotype
  • StructuralVariant
  • StructuralVariantType Enum
  • StudyPhase Enum
  • StudyType Enum
  • SupportingReadType Enum
  • Therapy
  • Tier Enum
  • TimeUnit Enum
  • TraitAssociation Enum
  • Trial
  • TrialLocation
  • TumorigenesisClassification Enum
  • UniparentalDisomy
  • UniparentalDisomyEvidences
  • UniparentalDisomyFragment
  • UniparentalDisomyOrigin Enum
  • UniparentalDisomyType Enum
  • VariantAttributes
  • VariantCall
  • VariantClassification
  • VariantConsequence
  • VariantCoordinates
  • VariantFunctionalEffect Enum
  • VariantIdentifiers
  • Zygosity Enum

• org.opencb.biodata.models.variant.avro

  • AdditionalAttribute
  • AlleleOrigin Enum
  • AllelesCode Enum
  • AlternateCoordinate
  • ClinVar
  • ClinicalSignificance Enum
  • Confidence Enum
  • ConsequenceType
  • ConsistencyStatus Enum
  • Cosmic
  • Cytoband
  • Drug
  • DrugResponseClassification Enum
  • EthnicCategory Enum
  • EvidenceEntry
  • EvidenceImpact Enum
  • EvidenceSource
  • EvidenceSubmission
  • ExonOverlap
  • Expression
  • ExpressionCall Enum
  • FeatureTypes Enum
  • FileEntry
  • GeneDrugInteraction
  • GeneTraitAssociation
  • GenomicFeature
  • Genotype
  • Gwas
  • HeritableTrait
  • ModeOfInheritance Enum
  • Penetrance Enum
  • PopulationFrequency
  • Property
  • ProteinFeature
  • ProteinVariantAnnotation
  • Repeat
  • Score
  • SequenceOntologyTerm
  • SomaticInformation
  • StructuralVariantType Enum
  • StructuralVariation
  • StudyEntry
  • TraitAssociation Enum
  • TumorigenesisClassification Enum
  • VariantAnnotation
  • VariantAvro
  • VariantClassification
  • VariantFunctionalEffect Enum
  • VariantHardyWeinbergStats
  • VariantStats
  • VariantTraitAssociation
  • VariantType Enum
  • Xref